[
譁ｰ隕
|
荳隕ｧ
|
蜊倩ｪ樊､懃ｴ｢
|
譛邨よ峩譁ｰ
|
繝倥Ν繝
|
繝ｭ繧ｰ繧､繝ｳ
]
莠悟ｮｮ遐皮ｩｶ螳､ | 豐ｿ蟯ｸ轣ｽ螳ｳ繝ｻ螟ｧ豌玲ｵｷ豢狗嶌莠剃ｽ懃畑繝ｻ豌怜吝､牙虚 | 驥第ｲ｢螟ｧ蟄ｦ
髢句ｧ玖｡:
#topicpath
* 莠ｬ螟ｧ繧ｹ繝代さ繝ｳ菴ｿ逕ｨ譁ｹ豕包ｼ域栢邊九→tipsｼ [#d5ca05cb]
譖ｴ譁ｰｼ2024/2/26
- [[繝槭ル繝･繧｢繝ｫ>http://web.kudpc.kyoto-u.ac.jp/manual-new/...
繧ｹ繝壹ャ繧ｯ縺ｪ縺ｩ隧ｳ邏ｰ縺ｯ譛ｬ螳ｶ繝槭ル繝･繧｢繝ｫ遲峨ｒ蜿らｧ縺励※縺上□縺輔＞ｼ
** Putty縺ｮ險ｭ螳 [#f29b8f0a]
- HostName system A: camphor.kudpc.kyoto-u.ac.jp
- HostName system B: laurel.kudpc.kyoto-u.ac.jp
- Connection>Data>username: 閾ｪ蛻縺ｮid
- Connection>SSH>Auth>Private key file: 遘伜ｯ骰ｵ繝輔ぃ繧､繝ｫ繧...
** 迺ｰ蠅險ｭ螳 [#s20bc141]
module listｼ壹Ο繝ｼ繝画ｸ医∩module縺ｮ陦ｨ遉ｺ
module availｼ壼ｨmodule縺ｮ陦ｨ遉ｺ
module show [module_name]ｼ嗄odule蜀螳ｹ縺ｮ陦ｨ遉ｺ
module load [module_name]ｼ嗄odule縺ｮ繝ｭ繝ｼ繝
module unload [module_name]ｼ嗄odule縺ｮ繧｢繝ｳ繝ｭ繝ｼ繝
module switch [module_name1] [module_name2]ｼ嗄odule縺ｮ蛻...
** 迥ｶ豕∫｢ｺ隱&螟画峩 [#hf0c7f30]
quotaｼ壹ョ繧｣繧ｹ繧ｯ菴ｿ逕ｨ迥ｶ豕√ｮ遒ｺ隱
quotaｼ夊ｪ蛻縺ｮ繝ｦ繝ｼ繧ｶ繝ｼID縺ｮ繝繧｣繧ｹ繧ｯ迥ｶ豕∫｢ｺ隱
quota -pｼ壹げ繝ｫ繝ｼ繝励ｮ繝繧｣繧ｹ繧ｯ迥ｶ豕∫｢ｺ隱
idｼ夂樟蝨ｨ縺ｮ繧ｰ繝ｫ繝ｼ繝励ｮ遒ｺ隱
spartitionｼ壼茜逕ｨ蜿ｯ閭ｽ縺ｪ繧ｭ繝･繝ｼ縺ｮ遒ｺ隱
squeueｼ壽兜蜈･縺励◆繧ｸ繝ｧ繝悶ｮ遒ｺ隱
qgroupｼ壹げ繝ｫ繝ｼ繝励ｮ繧ｸ繝ｧ繝悶ｒ遒ｺ隱
qsｼ壹ず繝ｧ繝悶ｮ隧ｳ邏ｰ繧堤｢ｺ隱
scancel xxxxｼ嗚ob id xxxx縺ｮ繧ｭ繝｣繝ｳ繧ｻ繝ｫ
scancel -u xxxx: 繝ｦ繝ｼ繧ｶ繝ｼ蜷阪′xxxx縺ｮjob繧偵く繝｣繝ｳ繧ｻ繝ｫ
** 險育ｮ励ｮ螳溯｡ [#gbac5cd7]
- 莨夊ｩｱ蝙句ｮ溯｡
tssrun -p grhogehoge --rsc p=1:t=2:c=3:m=4G -t 5:0:0 ./a...
ｼ啾.out縺ｮ螳溯｡鯉ｼ1繝励Ο繧ｻ繧ｹｼ2繧ｹ繝ｬ繝繝/繝励Ο繧ｻ繧ｹｼ3繧ｳ繧｢/繝励Ο...
- 繝舌ャ繝∝ｦ逅
sbatch hogehoge.shｼ喇ogehoge.sh繧呈兜蜈･ｼ趣ｼhogehoge.sh縺ｮ繧ｵ...
~
-- 繝舌ャ繝∝ｦ逅ｼ医せ繝ｬ繝繝我ｸｦ蛻励し繝ｳ繝励Νｼ
#!/bin/bash
#SBATCH -p grhogehoge
#SBATCH -t 5:00
#SBATCH --rsc p=1:t=2:c=3:m=4G
#SBATCH -o %x.%j.out
#============ Shell Script ============
set -x
srun ./a.out
-- 繝舌ャ繝∝ｦ逅ｼ医励Ο繧ｻ繧ｹ荳ｦ蛻励し繝ｳ繝励Νｼ
#!/bin/bash
#SBATCH -p grhogehoge
#SBATCH -t 5:00
#SBATCH --rsc p=8:t=1:c=1:m=4G
#SBATCH -o %x.%j.out
#============ Shell Script ============
srun ./a.out
-- 繝舌ャ繝∝ｦ逅ｼ医ワ繧､繝悶Μ繝繝我ｸｦ蛻励し繝ｳ繝励Νｼ
#!/bin/bash
#SBATCH -p grhogehoge
#SBATCH -t 5:00
#SBATCH --rsc p=8:t=4:c=4:m=4G
#SBATCH -o %x.%j.out
#============ Shell Script ============
srun ./a.out
** 險育ｮ苓ｳ貅舌ｮ荳企剞 [#p65e6f1d]
spartition繧堤｢ｺ隱
繧ｷ繧ｹ繝繝A縺ｮ繝弱ｼ繝牙ｽ薙◆繧
縲CPUｼ112coresｼ後Γ繝｢繝ｪｼ128GBｼ医ョ繝輔か繝ｫ繝亥､1142Mｼ
繧ｷ繧ｹ繝繝B縺ｮ繝弱ｼ繝牙ｽ薙◆繧
縲CPUｼ112coresｼ後Γ繝｢繝ｪｼ512GBｼ医ョ繝輔か繝ｫ繝亥､4571Mｼ
p=4:m=45G縺縺ｨ4x45GB=180GB縺ｪ縺ｮ縺ｧ繧ｷ繧ｹ繝繝A縺縺ｨ2繝弱ｼ繝会ｼ後す...
繝｡繝｢繝ｪ縺ｮ蜷郁ｨ井ｽｿ逕ｨ驥上ｯ繝励Ο繧ｻ繧ｹ謨ｰ(p)縺ｨ縺ｮ遨阪〒豎ｺ縺ｾ繧奇ｼ後励Ο繧ｻ...
險育ｮ玲凾髢薙ｮ荳企剞ｼ壹げ繝ｫ繝ｼ繝励さ繝ｼ繧ｹ336hｼ後お繝ｳ繝医Μ繧ｳ繝ｼ繧ｹ1h
** 繧ｸ繝ｧ繝吠d縺ｮ蜈･蜉帙ｒtab陬懷ｮ後〒縺阪ｋ繧医≧縺ｫ縺吶ｋｼ亥ｬ蠑上〒縺ｯ縺ｪ縺...
窶ｻ譌ｧ繧ｷ繧ｹ繝繝逕ｨｼ守樟蝨ｨ縺ｮ繧ｷ繧ｹ繝繝蜷代¢縺ｫ謾ｹ螟峨☆繧後ｰscancel縺ｧ繧...
蜿りｼ喇ttp://space.rish.kyoto-u.ac.jp/akdk/usage.html
*** bash-completion繧偵た繝ｼ繧ｹ縺九ｉ蜈･繧後ｋｼ [#sdd77ddb]
+ 繧ｽ繝ｼ繧ｹ繧偵ム繧ｦ繝ｳ繝ｭ繝ｼ繝峨＠縺ｦ螻暮幕ｼhttps://github.com/scop/b...
wget https://github.com/scop/bash-completion/archive/mas...
unzip master.zip
+ 險ｭ螳壹ヵ繧｡繧､繝ｫ縺ｮ菴懈
autoreconf -i 竊団onfigure縺御ｽ懈舌＆繧後ｋ
./configure --prefix=[閾ｪ蛻縺ｫ讓ｩ髯舌ｮ縺ゅｋ驕ｩ蠖薙↑path]
+ make縺励※繧､繝ｳ繧ｹ繝医ｼ繝ｫ
make
make install
+ 螳溯｡後☆繧九◆繧√ｮ險ｭ螳夲ｼ.bashrc縺ｮ邱ｨ髮ｼ
bash_completion.sh縺ｮ蜀螳ｹ繧.bashrc縺ｫ繧ｳ繝斐
縺､縺縺ｧ縺ｫ繧ｸ繝ｧ繝吠d縺ｮ蜈･蜉帙′蠢隕√↑繧ｳ繝槭Φ繝会ｼqcat, qdelｼ峨↓髢｢...
# qcat
_qcat() {
local cur=`_get_cword`
COMPREPLY=( $(compgen -W "$(qstat | tail -n +3 | cut -d....
return 0
}
complete -F _qcat qcat
# qdel
_qdel() {
local cur=`_get_cword`
COMPREPLY=( $(compgen -W "$(qstat | tail -n +3 | cut -d....
return 0
}
complete -F _qdel qdel
+ 螳御ｺｼ.bashrc繧定ｪｭ縺ｿ霎ｼ縺ｿ縺ｪ縺翫＠縺ｦ繝√ぉ繝繧ｯ
** NCL繧剃ｽｿ縺ｼ医す繧ｹ繝繝B, C縺ｮ縺ｿｼ弱す繧ｹ繝繝A縺ｧ縺ｯ菴ｿ逕ｨ荳榊庄ｼ [...
+ Exceed onDemand Client繧貞･繧後ｋｼ取焔鬆縺ｯ荳願ｨ假ｼ
+ Exceed onDemand Client縺ｧ繝ｭ繧ｰ繧､繝ｳｼ
module load ncl
# path縺ｮ險ｭ螳
export NCARG=/opt/app/ncl/6.4.0/ #繝舌ｼ繧ｸ繝ｧ繝ｳ縺ｮ螟画峩縺ｫ豕ｨ諢擾ｼ
export NCARG_ROOT=${NCARG}
export NCARG_BIN=${NCARG}/bin
export NCARG_LIB=${NCARG}/lib
export NCARG_INCLUDE=${NCARG}/include
export PATH=${NCARG}/bin:${PATH}
export LD_LIBRARY_PATH=${NCARG}/lib:${LD_LIBRARY_PATH}
邨ゆｺ陦:
#topicpath
* 莠ｬ螟ｧ繧ｹ繝代さ繝ｳ菴ｿ逕ｨ譁ｹ豕包ｼ域栢邊九→tipsｼ [#d5ca05cb]
譖ｴ譁ｰｼ2024/2/26
- [[繝槭ル繝･繧｢繝ｫ>http://web.kudpc.kyoto-u.ac.jp/manual-new/...
繧ｹ繝壹ャ繧ｯ縺ｪ縺ｩ隧ｳ邏ｰ縺ｯ譛ｬ螳ｶ繝槭ル繝･繧｢繝ｫ遲峨ｒ蜿らｧ縺励※縺上□縺輔＞ｼ
** Putty縺ｮ險ｭ螳 [#f29b8f0a]
- HostName system A: camphor.kudpc.kyoto-u.ac.jp
- HostName system B: laurel.kudpc.kyoto-u.ac.jp
- Connection>Data>username: 閾ｪ蛻縺ｮid
- Connection>SSH>Auth>Private key file: 遘伜ｯ骰ｵ繝輔ぃ繧､繝ｫ繧...
** 迺ｰ蠅險ｭ螳 [#s20bc141]
module listｼ壹Ο繝ｼ繝画ｸ医∩module縺ｮ陦ｨ遉ｺ
module availｼ壼ｨmodule縺ｮ陦ｨ遉ｺ
module show [module_name]ｼ嗄odule蜀螳ｹ縺ｮ陦ｨ遉ｺ
module load [module_name]ｼ嗄odule縺ｮ繝ｭ繝ｼ繝
module unload [module_name]ｼ嗄odule縺ｮ繧｢繝ｳ繝ｭ繝ｼ繝
module switch [module_name1] [module_name2]ｼ嗄odule縺ｮ蛻...
** 迥ｶ豕∫｢ｺ隱&螟画峩 [#hf0c7f30]
quotaｼ壹ョ繧｣繧ｹ繧ｯ菴ｿ逕ｨ迥ｶ豕√ｮ遒ｺ隱
quotaｼ夊ｪ蛻縺ｮ繝ｦ繝ｼ繧ｶ繝ｼID縺ｮ繝繧｣繧ｹ繧ｯ迥ｶ豕∫｢ｺ隱
quota -pｼ壹げ繝ｫ繝ｼ繝励ｮ繝繧｣繧ｹ繧ｯ迥ｶ豕∫｢ｺ隱
idｼ夂樟蝨ｨ縺ｮ繧ｰ繝ｫ繝ｼ繝励ｮ遒ｺ隱
spartitionｼ壼茜逕ｨ蜿ｯ閭ｽ縺ｪ繧ｭ繝･繝ｼ縺ｮ遒ｺ隱
squeueｼ壽兜蜈･縺励◆繧ｸ繝ｧ繝悶ｮ遒ｺ隱
qgroupｼ壹げ繝ｫ繝ｼ繝励ｮ繧ｸ繝ｧ繝悶ｒ遒ｺ隱
qsｼ壹ず繝ｧ繝悶ｮ隧ｳ邏ｰ繧堤｢ｺ隱
scancel xxxxｼ嗚ob id xxxx縺ｮ繧ｭ繝｣繝ｳ繧ｻ繝ｫ
scancel -u xxxx: 繝ｦ繝ｼ繧ｶ繝ｼ蜷阪′xxxx縺ｮjob繧偵く繝｣繝ｳ繧ｻ繝ｫ
** 險育ｮ励ｮ螳溯｡ [#gbac5cd7]
- 莨夊ｩｱ蝙句ｮ溯｡
tssrun -p grhogehoge --rsc p=1:t=2:c=3:m=4G -t 5:0:0 ./a...
ｼ啾.out縺ｮ螳溯｡鯉ｼ1繝励Ο繧ｻ繧ｹｼ2繧ｹ繝ｬ繝繝/繝励Ο繧ｻ繧ｹｼ3繧ｳ繧｢/繝励Ο...
- 繝舌ャ繝∝ｦ逅
sbatch hogehoge.shｼ喇ogehoge.sh繧呈兜蜈･ｼ趣ｼhogehoge.sh縺ｮ繧ｵ...
~
-- 繝舌ャ繝∝ｦ逅ｼ医せ繝ｬ繝繝我ｸｦ蛻励し繝ｳ繝励Νｼ
#!/bin/bash
#SBATCH -p grhogehoge
#SBATCH -t 5:00
#SBATCH --rsc p=1:t=2:c=3:m=4G
#SBATCH -o %x.%j.out
#============ Shell Script ============
set -x
srun ./a.out
-- 繝舌ャ繝∝ｦ逅ｼ医励Ο繧ｻ繧ｹ荳ｦ蛻励し繝ｳ繝励Νｼ
#!/bin/bash
#SBATCH -p grhogehoge
#SBATCH -t 5:00
#SBATCH --rsc p=8:t=1:c=1:m=4G
#SBATCH -o %x.%j.out
#============ Shell Script ============
srun ./a.out
-- 繝舌ャ繝∝ｦ逅ｼ医ワ繧､繝悶Μ繝繝我ｸｦ蛻励し繝ｳ繝励Νｼ
#!/bin/bash
#SBATCH -p grhogehoge
#SBATCH -t 5:00
#SBATCH --rsc p=8:t=4:c=4:m=4G
#SBATCH -o %x.%j.out
#============ Shell Script ============
srun ./a.out
** 險育ｮ苓ｳ貅舌ｮ荳企剞 [#p65e6f1d]
spartition繧堤｢ｺ隱
繧ｷ繧ｹ繝繝A縺ｮ繝弱ｼ繝牙ｽ薙◆繧
縲CPUｼ112coresｼ後Γ繝｢繝ｪｼ128GBｼ医ョ繝輔か繝ｫ繝亥､1142Mｼ
繧ｷ繧ｹ繝繝B縺ｮ繝弱ｼ繝牙ｽ薙◆繧
縲CPUｼ112coresｼ後Γ繝｢繝ｪｼ512GBｼ医ョ繝輔か繝ｫ繝亥､4571Mｼ
p=4:m=45G縺縺ｨ4x45GB=180GB縺ｪ縺ｮ縺ｧ繧ｷ繧ｹ繝繝A縺縺ｨ2繝弱ｼ繝会ｼ後す...
繝｡繝｢繝ｪ縺ｮ蜷郁ｨ井ｽｿ逕ｨ驥上ｯ繝励Ο繧ｻ繧ｹ謨ｰ(p)縺ｨ縺ｮ遨阪〒豎ｺ縺ｾ繧奇ｼ後励Ο繧ｻ...
險育ｮ玲凾髢薙ｮ荳企剞ｼ壹げ繝ｫ繝ｼ繝励さ繝ｼ繧ｹ336hｼ後お繝ｳ繝医Μ繧ｳ繝ｼ繧ｹ1h
** 繧ｸ繝ｧ繝吠d縺ｮ蜈･蜉帙ｒtab陬懷ｮ後〒縺阪ｋ繧医≧縺ｫ縺吶ｋｼ亥ｬ蠑上〒縺ｯ縺ｪ縺...
窶ｻ譌ｧ繧ｷ繧ｹ繝繝逕ｨｼ守樟蝨ｨ縺ｮ繧ｷ繧ｹ繝繝蜷代¢縺ｫ謾ｹ螟峨☆繧後ｰscancel縺ｧ繧...
蜿りｼ喇ttp://space.rish.kyoto-u.ac.jp/akdk/usage.html
*** bash-completion繧偵た繝ｼ繧ｹ縺九ｉ蜈･繧後ｋｼ [#sdd77ddb]
+ 繧ｽ繝ｼ繧ｹ繧偵ム繧ｦ繝ｳ繝ｭ繝ｼ繝峨＠縺ｦ螻暮幕ｼhttps://github.com/scop/b...
wget https://github.com/scop/bash-completion/archive/mas...
unzip master.zip
+ 險ｭ螳壹ヵ繧｡繧､繝ｫ縺ｮ菴懈
autoreconf -i 竊団onfigure縺御ｽ懈舌＆繧後ｋ
./configure --prefix=[閾ｪ蛻縺ｫ讓ｩ髯舌ｮ縺ゅｋ驕ｩ蠖薙↑path]
+ make縺励※繧､繝ｳ繧ｹ繝医ｼ繝ｫ
make
make install
+ 螳溯｡後☆繧九◆繧√ｮ險ｭ螳夲ｼ.bashrc縺ｮ邱ｨ髮ｼ
bash_completion.sh縺ｮ蜀螳ｹ繧.bashrc縺ｫ繧ｳ繝斐
縺､縺縺ｧ縺ｫ繧ｸ繝ｧ繝吠d縺ｮ蜈･蜉帙′蠢隕√↑繧ｳ繝槭Φ繝会ｼqcat, qdelｼ峨↓髢｢...
# qcat
_qcat() {
local cur=`_get_cword`
COMPREPLY=( $(compgen -W "$(qstat | tail -n +3 | cut -d....
return 0
}
complete -F _qcat qcat
# qdel
_qdel() {
local cur=`_get_cword`
COMPREPLY=( $(compgen -W "$(qstat | tail -n +3 | cut -d....
return 0
}
complete -F _qdel qdel
+ 螳御ｺｼ.bashrc繧定ｪｭ縺ｿ霎ｼ縺ｿ縺ｪ縺翫＠縺ｦ繝√ぉ繝繧ｯ
** NCL繧剃ｽｿ縺ｼ医す繧ｹ繝繝B, C縺ｮ縺ｿｼ弱す繧ｹ繝繝A縺ｧ縺ｯ菴ｿ逕ｨ荳榊庄ｼ [...
+ Exceed onDemand Client繧貞･繧後ｋｼ取焔鬆縺ｯ荳願ｨ假ｼ
+ Exceed onDemand Client縺ｧ繝ｭ繧ｰ繧､繝ｳｼ
module load ncl
# path縺ｮ險ｭ螳
export NCARG=/opt/app/ncl/6.4.0/ #繝舌ｼ繧ｸ繝ｧ繝ｳ縺ｮ螟画峩縺ｫ豕ｨ諢擾ｼ
export NCARG_ROOT=${NCARG}
export NCARG_BIN=${NCARG}/bin
export NCARG_LIB=${NCARG}/lib
export NCARG_INCLUDE=${NCARG}/include
export PATH=${NCARG}/bin:${PATH}
export LD_LIBRARY_PATH=${NCARG}/lib:${LD_LIBRARY_PATH}
繝壹ｼ繧ｸ蜷:
